Netcdf

Description and Overview

NetCDF (Network Common Data Form) is a set of software libraries and machine-independent data formats that support the creation, access, and sharing of array-oriented scientific data. This includes the NetCDF library as well as the NetCDF Operators (NCO), Climate Data Operators (CDO), NCCMP, and NCVIEW packages.

Files written with previous versions can be read or written with the current version.

Using NetCDF on Cray System

NetCDF libraries on the Cori are provided by Cray. To see the available Cray installations and versions use the following command:

module avail cray-netcdf
Loading the Cray NetCDF module files will also load a cray-hdf5 module file. No compile or link options are required as long as you use the Cray compiler wrappers. Below is an example for using the Cray compiler on Cori:

% module swap PrgEnv-intel PrgEnv-cray  (# or similar if needed to swap to another compiler)
% module load cray-netcdf 
% ftn  ... 
% cc   ... 
% CC   ... 

NetCDF Operators (NCO)

The NetCDF Operators (NCO) are a suite of file operators that facilitate manipulation and analysis of self-describing data stored in the NetCDF or HDF4/5 formats.

To access the NetCDF operators, just load the nco module file with the 'module load nco' command. This command will automatically load the NetCDF module file.

NCCMP

The NCCMP tool compares two NetCDF files bitwise or with a user-defined tolerance (absolute or relative percentage).

To use NCCMP, just load the nccmp module file with the 'module load nccmp' command. This command will automatically load the NetCDF module file.

Documentation

The NetCDF software was developed at the Unidata Program Center in Boulder, Colorado.

Availability at NERSC

  • Serial: cray-netcdf/4.4.1.6, cray-netcdf/4.6.1.3(default)
  • Parallel: cray-netcdf-hdf5parallel/4.4.1.1.6, cray-netcdf-hdf5parallel/4.6.1.3(default)